Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015951953.1_cds_XP_016491844.1_82118
CDS Infomation

[gene=LOC107811433] [db_xref=GeneID:107811433] [protein=UPF0503 protein At3g09070, chloroplastic-like isoform X2] [protein_id=XP_016491844.1] [location=join(94737..96625,97784)] [gbkey=CDS]
Sequence

ATGAATCCCACCACTACTGAGAACCCAACGCAACCACCGCCACCGCCACTGCCACCGCCG
GCGCAGCCTCCTCGTTCCTCTTTCAGCTGTGACCGACACCCACATGAACACTTCTCCGGA
TTTTGCCCTGAATGCCTCTGTGAACGTCTCACTACTTTAGATCCTTCTTCTTCTTCCTCT
ACTAATAATAACCCTTCTTCTTCCTCTGTCCTCAAATCCCTTTTCTCCAAAACTTCTAAA
CCCACTTCATTTTTCCCCGAACTTCGCCGCACTAAGTCCTTTTCTGCTTCCAAAAACGAG
GCGTTGAGCTTCTTGACTGGTTCTAATTTTGAGCCCCAACGTAAGTCCTGTGACGTTCGA
GTTCGTAACACTCTTTGGTCCTTATTTTCCCTTGACGAAGACGCAAAAAAGACCTCCCTA
AACCCTCATTCTGAGAATACTGCTGATGCTTTTGTCAATAGACCAGTCCTAGAGTCTAAA
GAAGAAGAGGAAGAGGAACCAGAAAACGATAACGCCAACCACGGAAATGTGGTAAATGAA
ATAACTGAAGAGTCCCCTGTGGAAAACAGTTTTGCAGAAATTGTGGAAGAAGAGGTAGTG
AATGGGGATATATTATTAAAGCCGATGAAAGATCATATAGATCTCGATTCTTCGCAGGCG
AAAAAGCAGACTTCAGGAGGAGGAAGGGACTTGAAGGAAATTGCAGGAAGTTTCTTATCA
GCTGCATCAGTTTTCAGCAAGAAATGGCACAACTGGAGGCGAAAACAGAAGGCGAAAAAA
CGAAACAATGGTGACAACAACTCATCTACTACACTGTCATTGGAGAACCCCATTTCGAGG
AGGAAATACAACAACAGAGACACTCAATCGGAAATTGCTGATTATTGTGGATTTGGAAGA
AGGTCTTGTGACACTGAACCTCGATTTTCTCTCGATATTGGGAGGATTAGTGTTGATGAT
CCCAGGTACTCTTTCGACGAGCCACGAGCTTCTTGTGATGCCCACTTTGTCGCGAGGAGC
CTTCCGAGGATCATCCCGCCTATGGTTTCAGTGATAGAAGATGTGCCAGTGGTTCATGTT
CCACGGGCTGATGACCAAATTCCGGTGGAAGAGCCGCGTGTTTCAGTGAGCTGCATCAAT
GAGGATGGTGGTGATATGCCTGGAGGGTCTGTTCAGACTAGGGACTATTACTTGGATTCG
TCGTCAAGGCGGAGGAAGAGCCTTGATAGATCTAACTCAATTAGGAAAACAGCAGCTGCT
GTAGTGGCAGAGATTGATGAGATTAAAGCAGTTTCCAATGCCAAAGTTCTGCCTGAGAGG
GACTCGAATTCAAATTCAAATTCCAATTCTCTAAGGGATGATTTAACAGAGACTTTTGAA
TTGACAGGGTTTAAGGATAATGCTTCTGGGGTTGGGATTGGGGAACGCAAAGGGTCAAAA
AAATCGAAGAAATGGGCGTGGAATATATGGGGTTTTATACATAGGAAAGGTAATGGGAAC
AAAGATGAGGAAGAGGACAGGTATAGTAGATCAAATGGGGTGGAGAGGTCATTTTCAGGA
TCTTGGCAAGACATAAGGAGGGAGAATAATGGTGACTTAAGAGGGGGTCTTAATAGGAAT
ATGTTTAGGAGTAATAGCAGTGTTAGTTGGAGGAATTCGACTAATATTGGTGGTGGATCT
TTTGGTAATGTGAGGAATCTTGGCATTGATACTAATGGTCATGGTAAAAAGAAAGATGAT
TTTGTGTTGGAGAGGAATCGGAGTGCAAGGTATTCGCCTAACCATATGGAGAATGGATTC
TTGCGGTTCCATTTTGCTCCGATGAGAGGCAGCCGGAGAAATTTACCTGTGCAAACTAGG
CCAAATGGGAGGAGCGTGCTTCGACTCTAG

Peptide Sequence

PEP ID

XP_016491844.1
PEP Infomation

PREDICTED: UPF0503 protein At3g09070, chloroplastic-like isoform X2 [Nicotiana tabacum]
Sequence

MNPTTTENPTQPPPPPLPPPAQPPRSSFSCDRHPHEHFSGFCPECLCERLTTLDPSSSSS
TNNNPSSSSVLKSLFSKTSKPTSFFPELRRTKSFSASKNEALSFLTGSNFEPQRKSCDVR
VRNTLWSLFSLDEDAKKTSLNPHSENTADAFVNRPVLESKEEEEEEPENDNANHGNVVNE
ITEESPVENSFAEIVEEEVVNGDILLKPMKDHIDLDSSQAKKQTSGGGRDLKEIAGSFLS
AASVFSKKWHNWRRKQKAKKRNNGDNNSSTTLSLENPISRRKYNNRDTQSEIADYCGFGR
RSCDTEPRFSLDIGRISVDDPRYSFDEPRASCDAHFVARSLPRIIPPMVSVIEDVPVVHV
PRADDQIPVEEPRVSVSCINEDGGDMPGGSVQTRDYYLDSSSRRRKSLDRSNSIRKTAAA
VVAEIDEIKAVSNAKVLPERDSNSNSNSNSLRDDLTETFELTGFKDNASGVGIGERKGSK
KSKKWAWNIWGFIHRKGNGNKDEEEDRYSRSNGVERSFSGSWQDIRRENNGDLRGGLNRN
MFRSNSSVSWRNSTNIGGGSFGNVRNLGIDTNGHGKKKDDFVLERNRSARYSPNHMENGF
LRFHFAPMRGSRRNLPVQTRPNGRSVLRL

Transcript Sequence

Gene sequence data has not been registered.